GGenomics UI

Examples

Workflow blocks — ready result surfaces that compose the primitives for one operation, the genomics analog of retab's parse/extract/split blocks. Each maps to a real pipeline.

Structure prediction

Pairs the 3D structure and its pLDDT strip against the PAE matrix inside one LinkedSelectionProvider, so a residue picked in either lights up in the other. Drop in a prediction and get the canonical review view.

structure-viewer
pae-matrix
coordinate-link
Variant triage

A variant list beside the sequence, feature tracks, and structure — all linked. Click a variant to focus the residue, outline the domain it falls in, and mark it on the confidence strip.

variant-cell
sequence-viewer
track-viewer
structure-viewer
Homology search

A ranked hit list (e-value, bit score, % identity, coverage) beside the alignment. Selecting a hit selects its aligned span on the query and scrolls every linked viewer to it.

msa-viewer
coordinate-link
Binding pocket

The 3D structure beside the list of pocket-lining residues; selecting a residue focuses it in the structure strip and the sequence and marks it on the domain track.

structure-viewer
sequence-viewer
track-viewer
coordinate-link
Function annotation

Domains, sites and coverage above the query sequence and its homolog alignment, all linked. Selecting a domain's residues highlights the corresponding MSA columns, showing whether an annotation sits in a conserved core.

track-viewer
sequence-viewer
msa-viewer
coordinate-link
Genome browser

Ideogram overview + gene/coordinate search + a track-viewer stacking GENCODE gene models, phyloP conservation, and GC%, all streamed from UCSC by HTTP range. Click the ideogram or type a gene to jump anywhere.

ideogram
track-viewer
bio-locus
coordinate-link
GWAS → genes

A manhattan-plot across the genome; clicking a peak drops a locus into a streaming track-viewer zoomed to the hit, so you go from association signal to the genes and conservation underneath it in one click.

manhattan-plot
track-viewer
coordinate-link
Differential expression

A volcano-plot and an expression-heatmap over the same gene set, linked by a selected gene: click a point in the volcano and its row highlights in the heatmap, and vice-versa.

volcano-plot
expression-heatmap