GGenomics UI
Components/Viewers

PAE Matrix

@genomics/pae-matrix

Predicted aligned error / contact map.

Preview

030 Å
279×279 predicted aligned error
Use arrow keys to move along the sequence, Shift plus arrow to jump ten, Home and End for the ends, Enter to select, Space to add to the selection, Escape to clear.
Sample kinase domain
279 aa · 1–279
279 aa
Use arrow keys to move along the sequence, Shift plus arrow to jump ten, Home and End for the ends, Enter to select, Space to add to the selection, Escape to clear.

About

Paints one pixel per cell into an offscreen buffer and blits it scaled, which stays fast into the low thousands of residues. Hovering a cell reports the residue pair and broadcasts residue i; incoming linked selections draw crosshair guides.

Usage

import { PaeMatrix } from "@/components/ui/pae-matrix"

<PaeMatrix pae={matrix} max={30} size={320} />
Registry dependencies
@genomics/utils
@genomics/bio-colors
@genomics/coordinate-link
Source: components/ui/pae-matrix.tsx